• New published articles in 2014 with a Biqualys proteomics contribution

    09 December 2014

  • Some published articles with a Biqualys proteomics contribution

    01 July 2013

  • New website Biqualys

    22 March 2013

  • Preparing Biqualys for the next step

    01 August 2011

Some published articles with a Biqualys proteomics contribution

Monday 01 July 2013


  • De Rybel, B., Moller, B., Yoshida, S., Grabowicz, I., de Reuille, P.B., Boeren, S., Smith, R.S., Borst, J.W. and Weijers, D. (2013) A bHLH Complex Controls Embryonic Vascular Tissue Establishment and Indeterminate Growth in Arabidopsis. Developmental Cell 24(4), 426-437.
  • Fabregas, N., Li, N., Boeren, S., Nash, T.E., Goshe, M.B., Clouse, S.D., de Vries, S. and Cano-Delgado, A.I. (2013) The BRASSINOSTEROID INSENSITIVE1-LIKE3 Signalosome Complex Regulates Arabidopsis Root Development. Plant Cell 25(9), 3377-3388.
  • Kariithi, H.M., van Lent, J.W.M., Boeren, S., Abd-Alla, A.M.M., Ince, I.A., van Oers, M.M. and Vlak, J.M. (2013) Correlation between structure, protein composition, morphogenesis and cytopathology of Glossina pallidipes salivary gland hypertrophy virus. Journal of General Virology 94, 193-208.
  • Lu, J., Antunes Fernandes, E., Paez Cano, A.E., Vinitwatanakhun, J., Boeren, S., van Hooijdonk, T., van Knegsel, A., Vervoort, J. and Hettinga, K.A. (2013) Changes in Milk Proteome and Metabolome Associated with Dry Period Length, Energy Balance, and Lactation Stage in Postparturient Dairy Cows. J Proteome Res.
  • Oosterkamp, M.J., Boeren, S., Plugge, C.M., Schaap, P.J. and Stams, A.J. (2013) Metabolic response of Alicycliphilus denitrificans strain BC towards electron acceptor variation. Proteomics 13(18-19), 2886 - 2894.
  • Pas, M.F.W.t., Kruijt, L., Pierzchala, M., Crump, R.E., Boeren, S., Keuning, E., Hoving-Bolink, R., Hortós, M., Gispert, M., Arnau, J., Diestre, A. and Mulder, H.A. (2013) Identification of proteomic biomarkers in M. Longissimus dorsi as potential predictors of pork quality. Meat Science.
  • Rupakula, A., Kruse, T., Boeren, S., Holliger, C., Smidt, H. and Maillard, J. (2013) The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics. Philosophical Transactions of the Royal Society B-Biological Sciences 368(1616).
  • Schmidt, S.M., Houterman, P.M., Schreiver, I., Ma, L., Amyotte, S., Chellappan, B., Boeren, S., Takken, F.L. and Rep, M. (2013) MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum. Bmc Genomics 14, 119.
  • Sotoca, A.M., Roelofs-Hendriks, J., Boeren, S., van der Kraan, P.M., Vervoort, J., van Zoelen, E.J.J. and Piek, E. (2013) Comparative proteome approach demonstrates that platelet-derived growth factor C and D efficiently induce proliferation while maintaining multipotency of hMSCs. Experimental Cell Research 319(17), 2649-2662.


  • Gudesblat, G.E., Schneider-Pizon, J., Betti, C., Mayerhofer, J., Vanhoutte, I., van Dongen, W., Boeren, S., Zhiponova, M., de Vries, S., Jonak, C. and Russinova, E. (2012) SPEECHLESS integrates brassinosteroid and stomata signalling pathways. Nature Cell Biology 14(5), 548-U214.
  • Peng, K., van Lent, J.W.M., Boeren, S., Fang, M.G., Theilmann, D.A., Erlandson, M.A., Vlak, J.M. and van Oers, M.M. (2012) Characterization of Novel Components of the Baculovirus Per Os Infectivity Factor Complex. Journal of Virology 86(9), 4981-4988.
  • Smaczniak, C., Immink, R.G.H., Muino, J.M., Blanvillain, R., Busscher, M., Busscher-Lange, J., Dinh, Q.D., Liu, S.J., Westphal, A.H., Boeren, S., Parcy, F., Xu, L., Carles, C.C., Angenent, G.C. and Kaufmann, K. (2012) Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development. Proceedings of the National Academy of Sciences of the United States of America 109(5), 1560-1565.
  • Smaczniak, C., Li, N., Boeren, S., America, T., van Dongen, W., Goerdayal, S.S., de Vries, S., Angenent, G.C. and Kaufmann, K. (2012) Proteomics-based identification of low-abundance signaling and regulatory protein complexes in native plant tissues. Nature Protocols 7(12), 2144-2158.


  • Hettinga, K., van Valenberg, H., de Vries, S., Boeren, S., van Hooijdonk, T., van Arendonk, J. and Vervoort, J. (2011) The Host Defense Proteome of Human and Bovine Milk. Plos One 6(4).
  • Kariithi, H.M., Ince, I.A., Boeren, S., Abd-Alla, A.M.M., Parker, A.G., Aksoy, S., Vlak, J.M. and van Oers, M.M. (2011) The Salivary Secretome of the Tsetse Fly Glossina pallidipes (Diptera: Glossinidae) Infected by Salivary Gland Hypertrophy Virus. Plos Neglected Tropical Diseases 5(11).
  • Lu, J., Boeren, S., de Vries, S.C., van Valenberg, H.J.F., Vervoort, J. and Hettinga, K. (2011) Filter-aided sample preparation with dimethyl labeling to identify and quantify milk fat globule membrane proteins. Journal of Proteomics 75, 340.
  • Mravec, J., Petrasek, J., Li, N., Boeren, S., Karlova, R., Kitakura, S., Parezova, M., Naramoto, S., Nodzynski, T., Dhonukshe, P., Bednarek, S.Y., Zazimalova, E., de Vries, S. and Friml, J. (2011) Cell Plate Restricted Association of DRP1A and PIN Proteins Is Required for Cell Polarity Establishment in Arabidopsis. Current Biology 21(12), 1055-1060.
  • Rooijers, K., Kolmeder, C., Juste, C., Dore, J., de Been, M., Boeren, S., Galan, P., Beauvallet, C., de Vos, W.M. and Schaap, P.J. (2011) An iterative workflow for mining the human intestinal metaproteome. Bmc Genomics 12.
  • Sotoca, A.M., Gelpke, M.D.S., Boeren, S., Strom, A., Gustafsson, J.A., Murk, A.J., Rietjens, I.M.C.M. and Vervoort, J. (2011) Quantitative Proteomics and Transcriptomics Addressing the Estrogen Receptor Subtype-mediated Effects in T47D Breast Cancer Cells Exposed to the Phytoestrogen Genistein. Molecular & Cellular Proteomics 10(1).
  • van Beurden, S.J., Leroy, B., Wattiez, R., Haenen, O.L.M., Boeren, S., Vervoort, J.J.M., Peeters, B.P.H., Rottier, P.J.M., Engelsma, M.Y. and Vanderplasschen, A.F. (2011) Identification and localization of the structural proteins of anguillid herpesvirus 1. Veterinary Research 42.
  • van't Klooster, J.W., van der Kamp, M.W., Vervoort, J., Beekwilder, J., Boeren, S., Joosten, M.H.A.J., Thomma, B.P.H.J. and de Wit, P.J.G.M. (2011) Affinity of Avr2 for tomato cysteine protease Rcr3 correlates with the Avr2-triggered Cf-2-mediated hypersensitive response. Molecular Plant Pathology 12(1), 21-30.
  • Xu, F., Ince, I.A., Boeren, S., Vlak, J.M. and van Oers, M.M. (2011) Protein composition of the occlusion derived virus of Chrysodeixis chalcites nucleopolyhedrovirus. Virus Research 158(1-2), 1-7.

2008 - 2010

  • Ince, I.A., Boeren, S.A., van Oers, M.M., Vervoort, J.J.M. and Vlak, J.M. (2010) Proteomic analysis of Chilo iridescent virus. Virology 405(1), 253-258.
  • Kariithi, H.M., Ince, I.A., Boeren, S., Vervoort, J., Bergoin, M., van Oers, M.M., Abd-Alla, A.M.M. and Vlak, J.M. (2010) Proteomic analysis of Glossina pallidipes salivary gland hypertrophy virus virions for immune intervention in tsetse fly colonies. Journal of General Virology 91, 3065-3074.
  • Sotoca, A.M., Bovee, T.F.H., Brand, W., Velikova, N., Boeren, S., Murk, A.J., Vervoort, J. and Rietjens, I.M.C.M. (2010) Superinduction of estrogen receptor mediated gene expression in luciferase based reporter gene assays is mediated by a post-transcriptional mechanism. Journal of Steroid Biochemistry and Molecular Biology 122(4), 204-211.
  • Karlova, R., Boeren, S., van Dongen, W., Kwaaitaal, M., Aker, J., Vervoort, J. and de Vries, S. (2009) Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases. Proteomics 9(2), 368-379.
  • van Esse, H.P., van't Klooster, J.W., Bolton, M.D., Yadeta, K.A., van Baarlen, P., Boeren, S., Vervoort, J., de Wit, P.J.G.M. and Thomma, B.P.H.J. (2008) The Cladosporium fulvum virulence protein Avr2 inhibits host proteases required for basal defense. Plant Cell 20(7), 1948-1963.